Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs771476 chr1:93851864 C/T 3.56E-6 494 31.3 28.67 18.97 KM Plot
PRAD rs771479 chr1:93848560 C/A 3.54E-6 494 31.37 28.13 18.97 KM Plot
PRAD rs771482 chr1:93844057 G/A 3.59E-6 494 31.33 28.4 18.97 KM Plot
PRAD rs77175292 chr5:154161173 A/C 0 491 29.97 35.57 4.87 KM Plot
PRAD rs77177161 chr11:6923149 C/G 1.53E-12 484 30.8 29.97 18.13 KM Plot
PRAD rs77180878 chr2:241753651 A/C 1.62E-6 488 29.32 33.02 26.78 KM Plot
PRAD rs7720150 chr5:138334069 C/A 9.67E-5 492 32.77 30.57 28.73 KM Plot
PRAD rs77237902 chr5:154339093 G/A 0 489 30.3 32.85 4.87 KM Plot
PRAD rs77241311 chr6:43364043 C/T 4.11E-12 485 31.27 29.4 44.3 KM Plot
PRAD rs77241855 chr4:165645314 TA/T 5.68E-5 492 30.77 32.9 44.32 KM Plot
PRAD rs77254963 chr11:1653954 A/G 7.66E-5 489 28.8 29.2 31.63 KM Plot
PRAD rs77263000 chr7:135099419 C/T 2.09E-9 491 30.8 31.33 3.03 KM Plot
PRAD rs7727405 chr5:171738710 C/T 1.22E-5 494 30.77 33.07 28.43 KM Plot
PRAD rs77288214 chr11:24224014 T/G 5.74E-9 493 30.8 38.65 22.92 KM Plot
PRAD rs77348459 chr1:3225368 G/T 8.86E-10 488 30.78 31.4 15.17 KM Plot